STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_0219PFAM: protein of unknown function DUF82; KEGG: met:M446_3160 hypothetical protein. (167 aa)    
Predicted Functional Partners:
Mnod_0218
PFAM: Amidase; KEGG: met:M446_3159 amidase.
       0.786
Mnod_3210
PFAM: protein of unknown function DUF355; KEGG: bbt:BBta_1587 hypothetical protein.
  
     0.656
Mnod_0220
HAD-superfamily hydrolase, subfamily IIB; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
       0.495
Mnod_3292
PFAM: Radical SAM domain protein; KEGG: mca:MCA0073 pyruvate formate lyase-activating enzyme, putative.
 
     0.460
Mnod_3293
PFAM: protein of unknown function DUF52; KEGG: mca:MCA0072 hypothetical protein.
  
     0.409
Mnod_3676
PFAM: PEBP family protein; KEGG: met:M446_0061 PEBP family protein.
  
     0.401
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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