Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_0273KEGG: met:M446_2337 hypothetical protein. (113 aa)    
Predicted Functional Partners:
Mnod_0274
PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: met:M446_2336 oxidoreductase FAD/NAD(P)-binding subunit.
       0.702
Mnod_0275
KEGG: met:M446_2335 ABC-type multidrug transport system ATPase and permease components-like protein.
       0.462
Mnod_0272
KEGG: met:M446_2338 response regulator receiver protein.
       0.449
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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