STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_0286PFAM: Orn/Lys/Arg decarboxylase major region; aromatic amino acid beta-eliminating lyase/threonine aldolase; Orn/Lys/Arg decarboxylase domain protein; KEGG: mrd:Mrad2831_4404 ornithine decarboxylase. (786 aa)    
Predicted Functional Partners:
Mnod_1215
Arginase; TIGRFAM: arginase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: met:M446_1825 arginase; Belongs to the arginase family.
  
 
 0.924
Mnod_1649
PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: met:M446_0446 ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
    
 0.919
Mnod_2912
PFAM: aminotransferase class-III; KEGG: azc:AZC_2031 hypothetical protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
    
 0.905
Mnod_2920
PFAM: GCN5-related N-acetyltransferase; KEGG: met:M446_2666 GCN5-related N-acetyltransferase.
     
 0.905
Mnod_1216
PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: met:M446_1826 ornithine cyclodeaminase.
    
  0.900
Mnod_1004
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: met:M446_1383 ATPase.
   
 
 0.720
Mnod_5171
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: met:M446_4480 ATPase.
   
 
 0.720
Mnod_4183
KEGG: rec:RHECIAT_PC0000307 putative aminoacid/polyamine transporter, permease protein.
  
  
 0.519
ruvC
Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.
       0.462
Mnod_0287
PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: met:M446_2324 pyruvate ferredoxin/flavodoxin oxidoreductase.
       0.446
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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