Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_0295PFAM: regulatory protein TetR; KEGG: met:M446_2310 TetR family transcriptional regulator. (220 aa)    
Predicted Functional Partners:
Mnod_0297
PFAM: AMP-dependent synthetase and ligase; KEGG: met:M446_2308 AMP-dependent synthetase and ligase.
 
     0.683
Mnod_0296
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: met:M446_2309 ABC transporter related.
 
     0.631
Mnod_0299
PFAM: inner-membrane translocator; KEGG: met:M446_2306 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
     0.608
Mnod_0298
PFAM: inner-membrane translocator; KEGG: met:M446_2307 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
     0.584
Mnod_0300
KEGG: met:M446_2305 putative branched-chain amino acid ABC transport system substrate-binding protein.
 
     0.518
Mnod_3368
PFAM: regulatory protein TetR; KEGG: xau:Xaut_0894 TetR family transcriptional regulator.
  
     0.511
Mnod_0301
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: met:M446_2304 ABC transporter related.
 
     0.406
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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