Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_0305PFAM: major facilitator superfamily MFS_1; KEGG: met:M446_2300 major facilitator transporter. (432 aa)    
Predicted Functional Partners:
Mnod_0306
PFAM: regulatory protein TetR; KEGG: met:M446_2299 TetR family transcriptional regulator.
 
     0.739
Mnod_3199
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; KEGG: mex:Mext_3793 regulatory protein MarR.
 
     0.540
Mnod_0059
PFAM: extracellular solute-binding protein family 1; KEGG: met:M446_0059 extracellular solute-binding protein.
 
    0.442
Mnod_3345
PFAM: aldo/keto reductase; KEGG: xac:XAC1212 oxidoreductase.
  
    0.431
Mnod_2764
PFAM: extracellular solute-binding protein family 1; KEGG: met:M446_6139 extracellular solute-binding protein.
 
    0.430
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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