STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_0311KEGG: met:M446_2295 hypothetical protein. (207 aa)    
Predicted Functional Partners:
Mnod_0789
PFAM: MgtC/SapB transporter; KEGG: bph:Bphy_6895 MgtC/SapB transporter.
  
  
 0.640
Mnod_2398
PFAM: MgtC/SapB transporter; KEGG: mpo:Mpop_3749 MgtC/SapB transporter.
  
  
 0.640
Mnod_6766
PFAM: MgtC/SapB transporter; KEGG: met:M446_6569 MgtC/SapB transporter.
  
  
 0.640
Mnod_0313
TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: mrd:Mrad2831_3614 EmrB/QacA family drug resistance transporter.
       0.630
Mnod_0312
PFAM: secretion protein HlyD family protein; KEGG: mrd:Mrad2831_3613 secretion protein HlyD family protein.
       0.484
Mnod_1238
PFAM: Pyridoxal-dependent decarboxylase; KEGG: met:M446_1957 aromatic-L-amino-acid decarboxylase.
   
  
 0.467
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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