Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_0316PFAM: Lytic transglycosylase catalytic; KEGG: met:M446_2292 lytic transglycosylase catalytic. (372 aa)    
Predicted Functional Partners:
Mnod_5541
KEGG: met:M446_5158 TPR repeat-containing protein.
  
     0.719
Mnod_4959
KEGG: met:M446_4931 hypothetical protein.
  
     0.697
Mnod_1155
TIGRFAM: MJ0042 family finger-like protein; KEGG: met:M446_2196 zinc finger-domain-containing protein.
  
     0.687
Mnod_4707
KEGG: met:M446_4191 hypothetical protein.
  
     0.675
Mnod_6059
KEGG: met:M446_5124 putative flagellar assembly protein FliH.
  
     0.673
Mnod_4704
KEGG: met:M446_4188 hypothetical protein.
  
     0.670
Mnod_4716
KEGG: met:M446_4201 hypothetical protein.
  
     0.669
Mnod_0717
KEGG: met:M446_1118 hypothetical protein.
  
     0.637
Mnod_4717
KEGG: met:M446_4202 hypothetical protein.
  
     0.632
Mnod_4528
PFAM: acyltransferase 3; KEGG: met:M446_3208 acyltransferase 3.
  
     0.605
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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