Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_0318Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: met:M446_2283 LysR family transcriptional regulator. (318 aa)    
Predicted Functional Partners:
Mnod_0320
PFAM: phosphoribulokinase/uridine kinase; KEGG: met:M446_2281 phosphoribulokinase.
 
   
 0.842
fbp
PFAM: Inositol phosphatase/fructose-16-bisphosphatase; KEGG: met:M446_2282 inositol phosphatase/fructose-16-bisphosphatase; Belongs to the FBPase class 1 family.
 
   
 0.815
Mnod_0657
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reu:Reut_B5436 LysR family transcriptional regulator.
  
     0.712
Mnod_0323
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: met:M446_2280 HAD family hydrolase.
 
     0.711
Mnod_3084
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sme:SMb20683 putative transcriptional regulator, LysR family protein.
  
     0.706
Mnod_6070
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: met:M446_5412 LysR family transcriptional regulator.
  
     0.601
Mnod_4938
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: met:M446_2650 LysR family transcriptional regulator.
  
     0.570
Mnod_3643
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: met:M446_5529 LysR family transcriptional regulator.
  
     0.547
Mnod_7283
Fructose-bisphosphate aldolase, class II, Calvin cycle subtype; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis.
  
   
 0.530
Mnod_5286
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: met:M446_3094 LysR family transcriptional regulator.
  
     0.502
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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