STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_0352PFAM: beta-lactamase; peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Sporulation domain protein; KEGG: met:M446_2257 serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family. (498 aa)    
Predicted Functional Partners:
Mnod_5469
PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: met:M446_0261 peptidoglycan glycosyltransferase.
 
 
 0.773
Mnod_6049
TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: met:M446_5843 1A family penicillin-binding protein.
  
  
 0.625
Mnod_7522
TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: met:M446_6778 1A family penicillin-binding protein.
 
 
 0.609
Mnod_0506
TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: met:M446_1046 1A family penicillin-binding protein.
 
 
 0.606
Mnod_5216
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: met:M446_2959 ErfK/YbiS/YcfS/YnhG family protein.
 
  
 0.606
Mnod_0190
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: met:M446_3650 ErfK/YbiS/YcfS/YnhG family protein.
 
  
 0.604
Mnod_1876
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: met:M446_0387 ErfK/YbiS/YcfS/YnhG family protein.
 
  
 0.602
Mnod_4187
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: met:M446_4450 ErfK/YbiS/YcfS/YnhG family protein.
 
  
 0.601
Mnod_7289
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: met:M446_5998 ErfK/YbiS/YcfS/YnhG family protein.
 
  
 0.601
Mnod_0720
TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: met:M446_1115 1A family penicillin-binding protein.
 
 
 0.598
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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