STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_0378PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: met:M446_2232 glyoxylate reductase. (334 aa)    
Predicted Functional Partners:
Mnod_0654
PFAM: MOFRL domain protein; KEGG: mpo:Mpop_4659 hydroxypyruvate reductase.
 
 0.937
Mnod_5964
PFAM: MOFRL domain protein; KEGG: met:M446_5205 hydroxypyruvate reductase.
 
 0.936
Mnod_7119
PFAM: HpcH/HpaI aldolase; KEGG: met:M446_6559 citrate (pro-3S)-lyase; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.927
Mnod_7178
PFAM: HpcH/HpaI aldolase; KEGG: met:M446_6315 HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.925
Mnod_1511
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: met:M446_0667 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding.
 
  
 
0.923
glcB
Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
  
 
 0.918
Mnod_2767
PFAM: aminotransferase class V; KEGG: met:M446_3486 serine--glyoxylate transaminase.
  
 
 0.917
Mnod_2906
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: mlo:mll7048 dehydrogenase.
 
  
 
0.917
Mnod_4911
PFAM: aminotransferase class V; KEGG: met:M446_4373 serine--glyoxylate transaminase.
  
 
 0.917
Mnod_7112
PFAM: aminotransferase class V; KEGG: met:M446_6552 serine--glyoxylate transaminase.
  
 
 0.917
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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