Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_0396PFAM: Cupin 2 conserved barrel domain protein; KEGG: met:M446_2215 cupin 2 domain-containing protein. (145 aa)    
Predicted Functional Partners:
ureD
Urease accessory protein UreD; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
       0.559
Mnod_7560
PFAM: protein of unknown function DUF779; KEGG: met:M446_6812 hypothetical protein.
       0.470
Mnod_0782
KEGG: met:M446_1740 hypothetical protein.
  
     0.468
Mnod_2279
KEGG: ret:RHE_CH02422 hypothetical conserved membrane protein.
  
     0.441
ureB
TIGRFAM: urease, beta subunit; urease, gamma subunit; PFAM: Urease beta subunit; Urease gamma subunit region; KEGG: met:M446_2213 urease, gamma subunit; Belongs to the urease beta subunit family.
       0.414
Mnod_6772
PFAM: GYD family protein; KEGG: met:M446_6926 GYD family protein.
  
     0.401
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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