Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Mnod_0423PFAM: UspA domain protein; KEGG: met:M446_6131 UspA domain-containing protein. (271 aa)    
Predicted Functional Partners:
Mnod_0425
KEGG: met:M446_3595 hypothetical protein.
 
     0.572
Mnod_0426
KEGG: met:M446_6133 hypothetical protein.
  
    0.550
Mnod_0424
Hypothetical protein.
       0.486
Mnod_0501
Transcriptional regulator, AraC family; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: helix-turn-helix- domain containing protein AraC type; Ada metal-binding domain protein; Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: met:M446_1042 AraC family transcriptional regulator.
  
  
 0.447
Mnod_1305
PFAM: UspA domain protein; KEGG: met:M446_0939 UspA domain-containing protein.
 
    
0.433
Mnod_2070
PFAM: protein of unknown function DUF201; KEGG: mpo:Mpop_0684 protein of unknown function DUF201.
  
     0.422
Mnod_6671
KEGG: mex:Mext_0129 hypothetical protein.
  
     0.407
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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