Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_0426KEGG: met:M446_6133 hypothetical protein. (82 aa)    
Predicted Functional Partners:
Mnod_7461
TIGRFAM: cytochrome c oxidase accessory protein CcoG; KEGG: met:M446_6711 cytochrome c oxidase accessory protein CcoG.
  
    0.842
Mnod_5853
PFAM: protein of unknown function DUF344; KEGG: met:M446_5330 hypothetical protein.
  
    0.757
Mnod_6914
PFAM: protein of unknown function DUF344; KEGG: met:M446_1564 hypothetical protein.
  
    0.757
Mnod_0425
KEGG: met:M446_3595 hypothetical protein.
       0.745
Mnod_0424
Hypothetical protein.
       0.741
Mnod_2110
KEGG: azc:AZC_4652 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
    0.653
Mnod_7462
PFAM: FixH family protein; KEGG: met:M446_6712 FixH family protein.
 
    0.613
Mnod_2113
PFAM: Cbb3-type cytochrome oxidase component; KEGG: met:M446_3272 Cbb3-type cytochrome oxidase component.
   
    0.587
Mnod_5232
PFAM: Cbb3-type cytochrome oxidase component; KEGG: met:M446_3272 Cbb3-type cytochrome oxidase component.
   
    0.587
Mnod_2135
TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: met:M446_2865 BadM/Rrf2 family transcriptional regulator.
   
    0.564
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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