Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_0434PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: met:M446_2076 radical SAM domain-containing protein. (432 aa)    
Predicted Functional Partners:
Mnod_0435
PFAM: glycosyl transferase group 1; KEGG: met:M446_2075 glycosyl transferase group 1.
 
     0.955
Mnod_0436
KEGG: met:M446_2074 hypothetical protein.
 
     0.954
Mnod_0432
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility domain; KR domain protein; KEGG: met:M446_2078 NAD-dependent epimerase/dehydratase.
 
     0.904
Mnod_0437
KEGG: met:M446_2073 hypothetical protein.
 
     0.904
Mnod_0438
KEGG: met:M446_2072 hypothetical protein.
 
     0.895
Mnod_0433
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: met:M446_2077 NAD-dependent epimerase/dehydratase.
 
     0.880
Mnod_1088
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: met:M446_2116 methyltransferase type 11.
 
  
 0.790
Mnod_0442
KEGG: met:M446_2068 hypothetical protein.
 
     0.773
Mnod_0959
KEGG: met:M446_1671 nucleotidyl transferase.
 
     0.772
Mnod_0958
KEGG: met:M446_1670 hypothetical protein.
 
     0.737
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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