STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_0441PFAM: LmbE family protein; KEGG: met:M446_2069 LmbE family protein. (285 aa)    
Predicted Functional Partners:
Mnod_0442
KEGG: met:M446_2068 hypothetical protein.
 
     0.925
Mnod_0959
KEGG: met:M446_1671 nucleotidyl transferase.
 
     0.795
Mnod_0134
KEGG: met:M446_2673 hypothetical protein.
  
    0.711
Mnod_1597
KEGG: mes:Meso_2483 putative Sir2-like transcriptional silencer protein.
  
     0.701
Mnod_0961
KEGG: met:M446_1673 glycosyl transferase, group 1.
 
  
 0.692
Mnod_0434
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: met:M446_2076 radical SAM domain-containing protein.
 
    0.663
Mnod_0443
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mpo:Mpop_2285 glyoxalase/bleomycin resistance protein/dioxygenase.
  
  
 0.661
Mnod_3693
PFAM: helicase domain protein; SMART: DEAD-like helicases; KEGG: met:M446_1272 type III restriction protein res subunit.
  
     0.659
Mnod_0958
KEGG: met:M446_1670 hypothetical protein.
 
     0.630
Mnod_0926
KEGG: bca:BCE_1117 hypothetical protein.
  
     0.621
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.