STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_0447PFAM: Methyltransferase type 11; KEGG: met:M446_2064 methyltransferase type 11. (246 aa)    
Predicted Functional Partners:
Mnod_0446
PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: met:M446_2065 multiple antibiotic resistance (MarC)-related protein.
  
    0.858
Mnod_5564
PFAM: DNA polymerase III chi subunit HolC; KEGG: met:M446_5406 DNA polymerase III chi subunit HolC.
  
     0.733
gloB
Hydroxyacylglutathione hydrolase; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.
     
 0.726
Mnod_5909
PFAM: helix-turn-helix domain protein; KEGG: met:M446_5287 XRE family transcriptional regulator.
  
     0.686
Mnod_6705
KEGG: met:M446_6186 metal-dependent phosphohydrolase.
  
     0.682
Mnod_0035
PFAM: protein of unknown function DUF88; KEGG: met:M446_0033 hypothetical protein.
  
     0.637
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
   
 0.634
Mnod_0230
PFAM: helix-turn-helix domain protein; KEGG: met:M446_3177 XRE family transcriptional regulator.
  
     0.629
Mnod_0386
TIGRFAM: HAD-superfamily subfamily IIA hydrolase like protein; HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: met:M446_2225 HAD family hydrolase.
  
     0.619
Mnod_7273
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: met:M446_6014 integral membrane sensor signal transduction histidine kinase.
  
     0.615
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.