Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_0477PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: met:M446_1715 ABC transporter related. (308 aa)    
Predicted Functional Partners:
Mnod_0478
PFAM: ABC-2 type transporter; KEGG: met:M446_1714 ABC-2 type transporter.
  
 0.984
Mnod_4030
ABC-2 type transporter, NodJ family; Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4- linked N-acetylglucosamine oligosaccharide. This subunit encodes the transporter.
 
  
 0.766
atpD
ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
   
 
 0.628
Mnod_0476
PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: bra:BRADO2400 serine protease DO-like precursor.
       0.580
Mnod_5312
PFAM: ABC-2 type transporter; KEGG: met:M446_5008 ABC-2 type transporter.
  
  
 0.527
Mnod_1945
Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: met:M446_0317 beta-ketoacyl synthase.
  
 
 0.517
Mnod_0479
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: met:M446_1711 GntR family transcriptional regulator.
       0.506
Mnod_0475
PFAM: regulatory protein LuxR; KEGG: met:M446_1716 LuxR family transcriptional regulator.
  
  
 0.432
Mnod_0474
PFAM: PDZ/DHR/GLGF domain protein; KEGG: met:M446_1717 PDZ/DHR/GLGF domain-containing protein.
       0.407
Mnod_0275
KEGG: met:M446_2335 ABC-type multidrug transport system ATPase and permease components-like protein.
  
 0.406
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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