STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_0487KEGG: met:M446_1693 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily. (340 aa)    
Predicted Functional Partners:
Mnod_0488
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: met:M446_1692 binding-protein-dependent transport systems inner membrane component.
 0.998
Mnod_0486
KEGG: met:M446_1694 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
 
0.994
Mnod_0489
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: met:M446_1691 alkaline phosphatase.
 
 0.994
Mnod_1509
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: met:M446_0669 binding-protein-dependent transport systems inner membrane component.
 
 0.984
Mnod_0490
PFAM: extracellular solute-binding protein family 5; KEGG: met:M446_1690 extracellular solute-binding protein.
 
 0.980
Mnod_0402
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: met:M446_2208 binding-protein-dependent transport systems inner membrane component.
 
 0.975
Mnod_1354
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: met:M446_0890 binding-protein-dependent transport systems inner membrane component.
 
 0.972
Mnod_3269
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: met:M446_2703 binding-protein-dependent transport systems inner membrane component.
 
 0.965
Mnod_1769
PFAM: extracellular solute-binding protein family 5; KEGG: mrd:Mrad2831_3283 extracellular solute-binding protein.
 
 0.962
Mnod_3655
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: met:M446_2972 binding-protein-dependent transport systems inner membrane component.
 
 0.962
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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