Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_0494PFAM: Endonuclease/exonuclease/phosphatase; KEGG: met:M446_1684 endonuclease/exonuclease/phosphatase. (259 aa)    
Predicted Functional Partners:
Mnod_2062
KEGG: mex:Mext_2422 hypothetical protein.
  
     0.715
Mnod_2282
KEGG: mex:Mext_2422 hypothetical protein.
  
     0.697
Mnod_4881
PFAM: Collagen triple helix repeat; KEGG: met:M446_3487 triple helix repeat-containing collagen.
  
     0.674
Mnod_2876
PFAM: glycosyl transferase family 2; KEGG: amc:MADE_00970 hypothetical protein.
 
     0.651
Mnod_7154
KEGG: met:M446_6339 hopanoid biosynthesis associated radical SAM protein HpnJ; TIGRFAM: hopanoid biosynthesis associated radical SAM protein HpnJ; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
  
     0.633
Mnod_2750
KEGG: nar:Saro_3231 hypothetical protein.
  
     0.599
Mnod_7155
TIGRFAM: hopanoid biosynthesis associated protein HpnK; PFAM: YdjC family protein; KEGG: met:M446_6340 hopanoid biosynthesis associated protein HpnK.
  
     0.551
Mnod_2878
KEGG: met:M446_3708 hypothetical protein.
  
     0.546
Mnod_6116
KEGG: met:M446_6738 hypothetical protein.
  
     0.544
Mnod_0759
KEGG: met:M446_6738 hypothetical protein.
  
     0.542
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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