Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_0504KEGG: rpd:RPD_1710 hypothetical protein. (340 aa)    
Predicted Functional Partners:
Mnod_5587
PFAM: monooxygenase FAD-binding; KEGG: rpe:RPE_3593 monooxygenase, FAD-binding protein.
  
     0.540
Mnod_6617
PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: rpe:RPE_3593 monooxygenase, FAD-binding protein.
  
     0.509
Mnod_6878
Hypothetical protein; KEGG: met:M446_1359 major facilitator transporter.
  
     0.476
Mnod_6867
PFAM: polysaccharide biosynthesis protein; KEGG: rle:pRL110396 putative transmembrane protein.
  
     0.474
Mnod_0503
KEGG: met:M446_1044 hypothetical protein.
       0.458
Mnod_6353
GAF sensor hybrid histidine kinase; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: met:M446_5171 GAF sensor hybrid histidine kinase.
 
    0.431
Mnod_6856
PFAM: glycosyl transferase family 2; KEGG: rle:pRL110395 putative succinoglycan biosynthesis protein.
  
     0.411
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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