Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_0527PFAM: Sel1 domain protein repeat-containing protein; KEGG: met:M446_3557 hypothetical protein. (370 aa)    
Predicted Functional Partners:
Mnod_0528
KEGG: met:M446_3556 hypothetical protein.
       0.738
Mnod_4125
PFAM: SCP-like extracellular; KEGG: met:M446_4389 SCP-like extracellular.
  
    0.559
Mnod_4557
PFAM: SCP-like extracellular; KEGG: met:M446_3058 SCP-like extracellular.
  
    0.559
Mnod_0079
PFAM: lipolytic protein G-D-S-L family; KEGG: met:M446_2090 GDSL family lipase.
  
 
 0.401
Mnod_1563
PFAM: lipolytic protein G-D-S-L family; KEGG: met:M446_0603 GDSL family lipase.
  
 
 0.401
Mnod_1776
PFAM: lipolytic protein G-D-S-L family; KEGG: met:M446_5471 GDSL family lipase.
  
 
 0.401
Mnod_2069
Hypothetical protein.
  
 
 0.401
Mnod_5560
KEGG: met:M446_5410 hypothetical protein.
  
 
 0.401
Mnod_6311
PFAM: lipolytic protein G-D-S-L family; Hemolysin-type calcium-binding region; FG-GAP repeat protein; KEGG: met:M446_1950 FG-GAP repeat-containing protein.
  
 
 0.401
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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