Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_0580KEGG: met:M446_4131 hypothetical protein. (169 aa)    
Predicted Functional Partners:
Mnod_0583
TIGRFAM: phage tail protein I; PFAM: tail protein I; KEGG: met:M446_4134 phage tail protein I.
  
    0.739
Mnod_0582
KEGG: met:M446_4133 pyocin R2_PP, tail fiber protein, putative.
  
    0.734
Mnod_0581
KEGG: met:M446_4132 hypothetical protein.
       0.687
Mnod_0584
KEGG: met:M446_4135 baseplate J family protein.
       0.664
Mnod_0579
KEGG: met:M446_4130 hypothetical protein.
  
  
 0.648
Mnod_0585
KEGG: mrd:Mrad2831_5181 putative transposase of insertion sequence.
  
    0.545
Mnod_0578
PFAM: major tail tube protein; KEGG: met:M446_4129 major tail tube protein.
  
    0.511
Mnod_0587
PFAM: Baseplate J family protein; KEGG: met:M446_4135 baseplate J family protein.
  
    0.483
Mnod_0588
PFAM: GPW/gp25 family protein; KEGG: met:M446_4136 gpW/GP25 family protein.
  
    0.460
Mnod_0590
TIGRFAM: phage baseplate assembly protein V; KEGG: met:M446_4138 phage baseplate assembly protein V.
  
    0.444
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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