Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Mnod_0595PFAM: peptidase S49; KEGG: rsq:Rsph17025_0104 peptidase S49. (420 aa)    
Predicted Functional Partners:
Mnod_0593
KEGG: mgm:Mmc1_1263 hypothetical protein.
 
     0.907
Mnod_0596
TIGRFAM: phage portal protein, lambda family; PFAM: portal protein lambda; KEGG: smd:Smed_1658 phage portal protein, lambda family.
 
    0.906
Mnod_0598
PFAM: terminase GpA; KEGG: syf:Synpcc7942_0731 putative phage terminase large subunit.
 
    0.891
Mnod_5771
KEGG: mca:MCA2662 hypothetical protein.
 
    0.737
Mnod_3863
KEGG: mca:MCA2924 hypothetical protein.
 
    0.730
Mnod_3864
KEGG: wpi:WP0328 putative phage related protein.
 
     0.729
Mnod_2462
TIGRFAM: phage portal protein, lambda family; PFAM: portal protein lambda; KEGG: met:M446_4145 lambda family phage portal protein.
 
    0.728
Mnod_5770
KEGG: wpi:WP0424 putative phage related protein.
 
     0.727
Mnod_2458
KEGG: nha:Nham_2387 hypothetical protein.
 
     0.714
Mnod_0597
PFAM: Head-to-tail joining protein W gpW family protein; KEGG: ecd:ECDH10B_1348 head-to-tail joining protein.
  
    0.686
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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