Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Mnod_0641Hypothetical protein; KEGG: mpt:Mpe_B0172 putative ATP-binding protein. (976 aa)    
Predicted Functional Partners:
Mnod_0642
KEGG: cyt:cce_5254 hypothetical protein.
 
     0.956
Mnod_0637
PFAM: phosphoadenosine phosphosulfate reductase; KEGG: cyt:cce_5239 hypothetical protein.
 
     0.821
Mnod_0636
KEGG: cyt:cce_5237 hypothetical protein.
 
     0.805
Mnod_0643
PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: aba:Acid345_2275 aminotransferase, class V.
       0.790
Mnod_0632
PFAM: cell divisionFtsK/SpoIIIE; KEGG: mpt:Mpe_B0175 DNA segregation ATPase FtsK/SpoIIIE-related protein.
 
    0.717
Mnod_1170
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: met:M446_1812 glutamate synthase (ferredoxin).
       0.492
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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