Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Mnod_0646KEGG: met:M446_5127 hypothetical protein. (153 aa)    
Predicted Functional Partners:
Mnod_2219
PFAM: protein of unknown function DUF1003; KEGG: met:M446_1548 hypothetical protein.
  
     0.690
Mnod_5894
KEGG: met:M446_5096 DoxX family protein.
  
     0.605
Mnod_3740
Cellulose synthase subunit B; Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Belongs to the AcsB/BcsB family.
  
     0.594
Mnod_3738
KEGG: mpo:Mpop_1315 hypothetical protein.
  
     0.575
Mnod_3728
KEGG: met:M446_4659 hypothetical protein.
  
     0.531
Mnod_5195
KEGG: met:M446_4457 hypothetical protein.
  
     0.447
Mnod_3669
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: cak:Caul_4997 mercuric reductase.
 
     0.416
Mnod_0156
KEGG: met:M446_4603 hypothetical protein.
  
     0.414
Mnod_6551
PFAM: plasmid encoded RepA protein; KEGG: met:M446_5948 plasmid encoded RepA protein.
  
     0.414
Mnod_3739
PFAM: glycoside hydrolase family 8; KEGG: mpo:Mpop_1314 cellulase.
  
     0.405
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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