Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_0653PFAM: Xylose isomerase domain protein TIM barrel; KEGG: bpy:Bphyt_4176 xylose isomerase domain protein TIM barrel. (296 aa)    
Predicted Functional Partners:
Mnod_0648
PFAM: protein of unknown function DUF993; KEGG: azc:AZC_2347 hypothetical protein.
 
    0.841
Mnod_0652
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: afu:AF0435 enoyl-CoA hydratase (fad-1).
       0.661
Mnod_0651
Coenzyme A transferase; CoA transferase having broad substrate specificity for short- chain acyl-CoA thioesters with the activity decreasing when the length of the carboxylic acid chain exceeds four carbons. Belongs to the 3-oxoacid CoA-transferase family.
       0.653
Mnod_0654
PFAM: MOFRL domain protein; KEGG: mpo:Mpop_4659 hydroxypyruvate reductase.
       0.552
Mnod_5601
PFAM: oxidoreductase domain protein; NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Oxidoreductase domain; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility domain; KEGG: ote:Oter_3247 oxidoreductase domain-containing protein.
  
  
 0.507
Mnod_0650
PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: ecv:APECO1_2419 putative transmembrane transport protein.
  
    0.477
Mnod_0655
TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; KEGG: met:M446_6782 pyruvate kinase; Belongs to the pyruvate kinase family.
     
 0.473
Mnod_0649
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: bpy:Bphyt_4178 short-chain dehydrogenase/reductase SDR.
 
     0.462
Mnod_1466
PFAM: type III effector Hrp-dependent outers; KEGG: mrd:Mrad2831_4643 hypothetical protein.
 
     0.422
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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