STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_0697PFAM: protein of unknown function DUF1321; KEGG: met:M446_1093 hypothetical protein. (211 aa)    
Predicted Functional Partners:
Mnod_6611
PFAM: protein of unknown function DUF1013; KEGG: met:M446_6075 hypothetical protein.
  
   
 0.799
Mnod_5968
KEGG: met:M446_5200 hypothetical protein; Belongs to the UPF0335 family.
  
   
 0.797
Mnod_2963
KEGG: met:M446_1049 hypothetical protein.
  
   
 0.786
Mnod_1608
TIGRFAM: double-strand break repair protein AddB; KEGG: met:M446_0491 double-strand break repair protein AddB.
  
     0.748
lysS
PFAM: Lysyl-tRNA synthetase class 1c; KEGG: met:M446_6283 lysine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
     0.746
Mnod_0379
PFAM: protein of unknown function DUF1058; KEGG: met:M446_2231 hypothetical protein.
  
     0.743
Mnod_6972
Putative two component transcriptional regulator, winged helix family; PFAM: transcriptional regulator domain protein; KEGG: gox:GOX1693 cell cycle transcriptional regulator CtrA.
  
     0.742
Mnod_0998
PFAM: import inner membrane translocase subunit Tim44; KEGG: met:M446_1374 import inner membrane translocase subunit Tim44.
  
     0.741
Mnod_6286
Putative two component transcriptional regulator, winged helix family; PFAM: transcriptional regulator domain protein; KEGG: gox:GOX1693 cell cycle transcriptional regulator CtrA.
  
     0.724
Mnod_1610
TIGRFAM: double-strand break repair helicase AddA; PFAM: UvrD/REP helicase; KEGG: met:M446_0489 double-strand break repair helicase AddA; Belongs to the helicase family. UvrD subfamily.
  
     0.704
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.