Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_0705KEGG: met:M446_2059 hypothetical protein. (1174 aa)    
Predicted Functional Partners:
Mnod_0307
KEGG: met:M446_2298 hypothetical protein.
 
     0.768
Mnod_7241
KEGG: met:M446_6043 outer membrane lipoprotein omp19.
  
     0.767
Mnod_7181
KEGG: met:M446_6312 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II-like protein.
 
     0.765
Mnod_6604
KEGG: met:M446_6067 hypothetical protein.
  
     0.764
Mnod_0362
KEGG: met:M446_2247 hypothetical protein.
  
     0.761
Mnod_2172
KEGG: met:M446_2469 hypothetical protein.
  
     0.752
Mnod_4360
KEGG: mex:Mext_4583 polysaccharide biosynthesis protein.
  
   
 0.749
Mnod_2044
Porin; PFAM: porin; KEGG: met:M446_4335 porin.
  
     0.746
Mnod_4444
KEGG: met:M446_3249 hypothetical protein.
  
     0.745
Mnod_5256
Porin; KEGG: met:M446_3292 porin.
  
     0.742
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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