Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_0752TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: met:M446_4709 polyhydroxyalkanoate depolymerase, intracellular. (446 aa)    
Predicted Functional Partners:
Mnod_6027
TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: met:M446_5804 poly(R)-hydroxyalkanoic acid synthase, class I.
 
  
 0.970
Mnod_4773
TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: met:M446_1953 poly(R)-hydroxyalkanoic acid synthase, class I.
 
  
 0.961
Mnod_0411
PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: met:M446_6101 poly-beta-hydroxybutyrate polymerase domain-containing protein.
 
  
 0.956
Mnod_3275
KEGG: met:M446_0084 PHA synthase subunit PhaC.
    
 0.911
Mnod_1489
TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: met:M446_0683 polyhydroxyalkanoate depolymerase, intracellular.
  
  
 
0.907
Mnod_1836
TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: met:M446_4888 polyhydroxyalkanoate depolymerase, intracellular.
  
  
 
0.901
Mnod_5918
TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHB accumulation regulatory domain protein; PHA accumulation regulator DNA-binding protein; KEGG: met:M446_5279 polyhydroxyalkonate synthesis repressor, PhaR.
 
   
 0.606
Mnod_0751
PFAM: major facilitator superfamily MFS_1; KEGG: mrd:Mrad2831_3645 major facilitator transporter.
       0.460
Mnod_4591
TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: met:M446_4798 3-hydroxybutyrate dehydrogenase.
  
   
 0.455
clpX
ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
   
    0.421
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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