Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_0758PFAM: sodium:dicarboxylate symporter; KEGG: lsp:Bsph_3689 C4-dicarboxylate transport protein (C4-dicarboxylate permease); Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. (446 aa)    
Predicted Functional Partners:
Mnod_7245
TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: met:M446_6039 succinate dehydrogenase, hydrophobic membrane anchor protein.
   
  
 0.588
Mnod_0757
TIGRFAM: 3-carboxy-cis,cis-muconate cycloisomerase; PFAM: fumarate lyase; 3-carboxy-ciscis-muconate cycloisomerase; KEGG: bja:bll7942 3-carboxy-cis,cis-muconate cycloisomerase.
       0.541
Mnod_0759
KEGG: met:M446_6738 hypothetical protein.
       0.456
Mnod_1170
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: met:M446_1812 glutamate synthase (ferredoxin).
     
 0.444
Mnod_0756
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: dac:Daci_1440 GntR family transcriptional regulator.
     
 0.408
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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