STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_0785Hypothetical protein. (75 aa)    
Predicted Functional Partners:
Mnod_0786
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: met:M446_4788 ECF subfamily RNA polymerase sigma-24 factor.
       0.773
Mnod_0787
KEGG: met:M446_4787 putative transmembrane anti-sigma factor.
       0.773
Mnod_0784
PFAM: blue (type 1) copper domain protein; KEGG: met:M446_4790 blue (type1) copper domain-containing protein.
       0.752
Mnod_0783
PFAM: metallophosphoesterase; KEGG: met:M446_4791 metallophosphoesterase.
       0.698
Mnod_0788
PFAM: transposase IS4 family protein; KEGG: xau:Xaut_4843 transposase IS4 family protein.
       0.598
Mnod_0782
KEGG: met:M446_1740 hypothetical protein.
       0.462
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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