STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_0807KEGG: xau:Xaut_3348 extracellular ligand-binding receptor. (402 aa)    
Predicted Functional Partners:
Mnod_4452
PFAM: inner-membrane translocator; KEGG: met:M446_3242 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
    0.851
Mnod_4451
PFAM: inner-membrane translocator; KEGG: met:M446_3243 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
    0.842
Mnod_4447
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: met:M446_3246 ABC transporter related.
 
    0.839
Mnod_4448
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: met:M446_3245 ABC transporter related.
 
    0.816
Mnod_1242
PFAM: inner-membrane translocator; KEGG: met:M446_1977 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.643
Mnod_1162
ABC transporter related; PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: met:M446_1796 ABC transporter related; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.641
Mnod_3750
ABC transporter related; PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: bme:BMEII0874 high-affinity branched-chain amino acid transport system permease protein LivH / high-affinity branched-chain amino acid transport ATP-binding protein LivG.
  
  
 0.641
Mnod_5329
ABC transporter related; PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: rpd:RPD_0777 ABC transporter related; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.641
Mnod_6585
PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: met:M446_6491 ABC transporter related; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.641
Mnod_2025
PFAM: inner-membrane translocator; KEGG: mpo:Mpop_3556 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
    0.548
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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