Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_0808TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: dar:Daro_0359 zinc-containing alcohol dehydrogenase superfamily protein. (327 aa)    
Predicted Functional Partners:
Mnod_0409
PFAM: phosphate acetyl/butaryl transferase; MaoC domain protein dehydratase; KEGG: met:M446_6099 phosphate butyryltransferase.
  
 0.920
Mnod_5242
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: met:M446_3281 3-hydroxyacyl-CoA dehydrogenase NAD-binding.
  
 0.918
Mnod_2175
TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; KEGG: met:M446_2475 methylmalonate-semialdehyde dehydrogenase.
   
  0.910
Mnod_2521
TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; KEGG: mpo:Mpop_4215 methylmalonate-semialdehyde dehydrogenase.
   
  0.910
Mnod_3635
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: met:M446_3936 acyl-CoA dehydrogenase domain-containing protein.
  
  0.908
Mnod_0153
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: met:M446_4606 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
  0.907
Mnod_3378
PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: nha:Nham_3107 branched-chain alpha-keto acid dehydrogenase subunit E2.
   
 0.907
Mnod_1158
PFAM: AMP-dependent synthetase and ligase; KEGG: met:M446_2199 AMP-dependent synthetase and ligase.
   
 
 0.905
Mnod_2081
PFAM: AMP-dependent synthetase and ligase; KEGG: met:M446_2688 AMP-dependent synthetase and ligase.
   
 
 0.905
Mnod_3983
PFAM: AMP-dependent synthetase and ligase; KEGG: rha:RHA1_ro06598 acetate--CoA ligase.
   
 
 0.905
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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