STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_0860PFAM: polysaccharide export protein; KEGG: mrd:Mrad2831_4555 polysaccharide export protein. (437 aa)    
Predicted Functional Partners:
Mnod_0861
PFAM: lipopolysaccharide biosynthesis protein; KEGG: mpo:Mpop_3538 lipopolysaccharide biosynthesis protein.
 
 
 0.956
Mnod_4355
PFAM: lipopolysaccharide biosynthesis protein; KEGG: mex:Mext_4589 lipopolysaccharide biosynthesis protein.
 
 
 0.937
Mnod_5599
PFAM: lipopolysaccharide biosynthesis protein; KEGG: mex:Mext_4129 lipopolysaccharide biosynthesis protein.
 
 
 0.927
Mnod_5885
PFAM: lipopolysaccharide biosynthesis protein; KEGG: bra:BRADO7056 putative exopolysaccharide biosynthesis protein.
 
 
 0.926
Mnod_5886
PFAM: lipopolysaccharide biosynthesis protein; KEGG: bra:BRADO7056 putative exopolysaccharide biosynthesis protein.
 
 
 0.924
Mnod_5214
PFAM: lipopolysaccharide biosynthesis protein; KEGG: met:M446_2958 lipopolysaccharide biosynthesis protein.
 
 
 0.877
Mnod_3177
KEGG: met:M446_4029 hypothetical protein.
  
 
 0.862
Mnod_5211
TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: met:M446_2955 undecaprenyl-phosphate glucose phosphotransferase.
 
  
 0.824
Mnod_0859
PFAM: glycosyl transferase group 1; KEGG: mpo:Mpop_3532 glycosyl transferase group 1.
 
    0.673
Mnod_0857
PFAM: sugar transferase; KEGG: mpo:Mpop_3531 undecaprenyl-phosphate galactose phosphotransferase.
 
  
 0.667
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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