STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_0885PFAM: putative transposase; KEGG: dsh:Dshi_3662 putative transposase. (402 aa)    
Predicted Functional Partners:
Mnod_3348
PFAM: integrase domain protein SAM domain protein; KEGG: nha:Nham_0858 phage integrase.
 
     0.789
Mnod_0927
PFAM: transposase IS4 family protein; KEGG: xau:Xaut_0557 transposase IS4 family protein.
  
     0.523
Mnod_3057
PFAM: transposase IS4 family protein; KEGG: xau:Xaut_0557 transposase IS4 family protein.
  
     0.523
Mnod_3346
PFAM: transposase IS4 family protein; KEGG: xau:Xaut_0557 transposase IS4 family protein.
  
     0.523
Mnod_4611
PFAM: transposase IS4 family protein; KEGG: xau:Xaut_0557 transposase IS4 family protein.
  
     0.523
Mnod_4639
PFAM: transposase IS4 family protein; KEGG: xau:Xaut_0557 transposase IS4 family protein.
  
     0.523
Mnod_6639
PFAM: transposase IS4 family protein; KEGG: xau:Xaut_0557 transposase IS4 family protein.
  
     0.523
Mnod_4341
PFAM: transposase IS66; KEGG: xau:Xaut_4598 transposase IS66.
  
     0.439
Mnod_6322
PFAM: transposase IS66; KEGG: xau:Xaut_4598 transposase IS66.
  
     0.439
Mnod_1170
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: met:M446_1812 glutamate synthase (ferredoxin).
  
  
 0.430
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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