STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_0887PFAM: Asp/Glu/hydantoin racemase; KEGG: cma:Cmaq_1394 Asp/Glu racemase. (239 aa)    
Predicted Functional Partners:
Mnod_7244
TIGRFAM: succinate dehydrogenase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: met:M446_6040 succinate dehydrogenase, flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
   
 
  0.903
Mnod_7242
TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; KEGG: met:M446_6042 succinate dehydrogenase and fumarate reductase iron-sulfur protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
     
  0.900
Mnod_7245
TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: met:M446_6039 succinate dehydrogenase, hydrophobic membrane anchor protein.
     
  0.900
Mnod_7246
TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: met:M446_6038 succinate dehydrogenase, cytochrome b556 subunit.
     
  0.900
Mnod_2741
TIGRFAM: aspartate racemase; PFAM: Asp/Glu/hydantoin racemase; KEGG: mrd:Mrad2831_4295 aspartate racemase.
  
  
  0.831
Mnod_2072
TIGRFAM: aspartate ammonia-lyase; PFAM: fumarate lyase; KEGG: met:M446_6431 aspartate ammonia-lyase.
     
 0.827
Mnod_0142
TIGRFAM: asparagine synthase (glutamine-hydrolyzing); asparagine synthase family amidotransferase; PFAM: glutamine amidotransferase class-II; asparagine synthase; KEGG: met:M446_2680 asparagine synthase amidotransferase.
     
  0.800
Mnod_0169
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: met:M446_4590 L-aspartate oxidase.
     
  0.800
Mnod_0303
PFAM: Asparaginase/glutaminase; KEGG: met:M446_2302 asparaginase.
     
  0.800
Mnod_0890
PFAM: aminotransferase class I and II; KEGG: bpt:Bpet4447 aspartate aminotransferase.
     
  0.800
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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