STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_0908PFAM: FAD dependent oxidoreductase; KEGG: abc:ACICU_02617 glycine/D-amino acid oxidase (deaminating). (460 aa)    
Predicted Functional Partners:
Mnod_3391
TIGRFAM: sarcosine oxidase, alpha subunit family; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: mex:Mext_3738 sarcosine oxidase alpha subunit family protein.
 
 
 0.859
Mnod_0909
PFAM: protein of unknown function DUF861 cupin_3; KEGG: abc:ACICU_02616 hypothetical protein.
  
    0.718
Mnod_0907
Transcriptional regulator, PucR family; PFAM: purine catabolism PurC domain protein; KEGG: abc:ACICU_02618 regulator of polyketide synthase expression.
 
     0.716
Mnod_3392
TIGRFAM: sarcosine oxidase, delta subunit family; PFAM: Sarcosine oxidase delta subunit heterotetrameric; KEGG: mrd:Mrad2831_2486 sarcosine oxidase delta subunit family protein.
 
 
 0.525
Mnod_7678
TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: met:M446_6964 agmatinase; Belongs to the arginase family.
 
  
 0.519
Mnod_0158
KEGG: met:M446_4601 ferredoxin protein.
  
     0.465
Mnod_2912
PFAM: aminotransferase class-III; KEGG: azc:AZC_2031 hypothetical protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.439
Mnod_5513
PFAM: aminotransferase class-III; KEGG: met:M446_3814 aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.409
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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