STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_0909PFAM: protein of unknown function DUF861 cupin_3; KEGG: abc:ACICU_02616 hypothetical protein. (116 aa)    
Predicted Functional Partners:
Mnod_0908
PFAM: FAD dependent oxidoreductase; KEGG: abc:ACICU_02617 glycine/D-amino acid oxidase (deaminating).
  
    0.718
Mnod_2907
PFAM: protein of unknown function DUF861 cupin_3; KEGG: mlo:mll7047 hypothetical protein.
  
     0.705
Mnod_5315
KEGG: met:M446_5011 hypothetical protein.
  
    0.507
Mnod_0907
Transcriptional regulator, PucR family; PFAM: purine catabolism PurC domain protein; KEGG: abc:ACICU_02618 regulator of polyketide synthase expression.
       0.453
Mnod_0906
PFAM: amino acid permease-associated region; KEGG: ppw:PputW619_2616 amino acid permease-associated region.
 
     0.425
Mnod_7403
PFAM: multicopper oxidase type 1; multicopper oxidase type 2; multicopper oxidase type 3; KEGG: met:M446_6581 multicopper oxidase type 3.
   
    0.422
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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