Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Mnod_0926KEGG: bca:BCE_1117 hypothetical protein. (167 aa)    
Predicted Functional Partners:
Mnod_0925
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sus:Acid_6031 methyltransferase type 11.
       0.773
Mnod_0441
PFAM: LmbE family protein; KEGG: met:M446_2069 LmbE family protein.
  
     0.621
Mnod_0923
KEGG: hma:rrnAC2320 hypothetical protein.
       0.601
Mnod_0924
KEGG: sus:Acid_6030 hypothetical protein.
       0.601
Mnod_1462
PFAM: acyltransferase 3; KEGG: rme:Rmet_2746 acyltransferase 3.
  
     0.448
Mnod_0927
PFAM: transposase IS4 family protein; KEGG: xau:Xaut_0557 transposase IS4 family protein.
       0.433
Mnod_0076
KEGG: sme:SMc01448 hypothetical protein.
  
     0.409
Mnod_3693
PFAM: helicase domain protein; SMART: DEAD-like helicases; KEGG: met:M446_1272 type III restriction protein res subunit.
  
     0.401
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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