Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_0951PFAM: CsbD family protein; KEGG: acr:Acry_3194 CsbD family protein; Belongs to the UPF0337 (CsbD) family. (124 aa)    
Predicted Functional Partners:
Mnod_0177
PFAM: protein of unknown function DUF1328; KEGG: met:M446_3661 hypothetical protein.
  
    0.608
Mnod_4397
PFAM: protein of unknown function DUF1328; KEGG: met:M446_2727 hypothetical protein.
  
    0.608
Mnod_6383
PFAM: protein of unknown function DUF1328; KEGG: met:M446_5876 hypothetical protein.
  
    0.608
Mnod_6133
PFAM: transport-associated; KEGG: mrd:Mrad2831_2622 transport-associated.
  
    0.564
Mnod_6174
PFAM: CBS domain containing protein; transport-associated; SMART: Transport-associated and nodulation region; KEGG: met:M446_3570 CBS domain-containing protein.
  
    0.551
Mnod_6717
KEGG: bur:Bcep18194_B2680 LuxR family transcriptional regulator; TIGRFAM: PAS sensor protein; PFAM: regulatory protein LuxR; PAS fold domain protein; SMART: PAS domain containing protein.
 
     0.535
Mnod_2364
PFAM: protein of unknown function DUF1458; KEGG: met:M446_2854 hypothetical protein.
  
    0.484
Mnod_0853
KEGG: met:M446_5532 hypothetical protein.
  
     0.474
Mnod_4927
KEGG: met:M446_4356 hypothetical protein.
  
     0.464
Mnod_1941
PFAM: Capsule polysaccharide biosynthesis protein; KEGG: met:M446_0321 capsule polysaccharide biosynthesis protein.
  
    0.460
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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