Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_0959KEGG: met:M446_1671 nucleotidyl transferase. (269 aa)    
Predicted Functional Partners:
Mnod_0958
KEGG: met:M446_1670 hypothetical protein.
 
    0.961
Mnod_0433
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: met:M446_2077 NAD-dependent epimerase/dehydratase.
 
  
 0.894
Mnod_0435
PFAM: glycosyl transferase group 1; KEGG: met:M446_2075 glycosyl transferase group 1.
 
  
 0.820
Mnod_0442
KEGG: met:M446_2068 hypothetical protein.
 
     0.810
Mnod_0960
PFAM: glycosyl transferase group 1; KEGG: met:M446_1672 glycosyl transferase group 1.
 
  
 0.801
Mnod_0441
PFAM: LmbE family protein; KEGG: met:M446_2069 LmbE family protein.
 
     0.795
Mnod_0961
KEGG: met:M446_1673 glycosyl transferase, group 1.
 
     0.792
Mnod_1088
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: met:M446_2116 methyltransferase type 11.
 
  
 0.792
Mnod_4334
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.791
Mnod_5506
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.791
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.