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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_1007PFAM: von Willebrand factor type A; KEGG: met:M446_1386 von Willebrand factor type A. (324 aa)    
Predicted Functional Partners:
Mnod_1005
PFAM: protein of unknown function DUF58; KEGG: met:M446_1384 hypothetical protein.
 
  
 0.964
Mnod_1008
SMART: von Willebrand factor type A; KEGG: met:M446_1387 von Willebrand factor type A.
 
   
 0.954
Mnod_1009
KEGG: met:M446_1388 TPR repeat-containing protein.
 
   
 0.954
Mnod_1004
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: met:M446_1383 ATPase.
 
  
 0.911
Mnod_1010
KEGG: met:M446_1389 hypothetical protein.
 
   
 0.896
Mnod_1006
KEGG: met:M446_1385 hypothetical protein.
       0.800
Mnod_5171
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: met:M446_4480 ATPase.
 
  
 0.667
Mnod_0636
KEGG: cyt:cce_5237 hypothetical protein.
   
  0.573
Mnod_5170
PFAM: protein of unknown function DUF58; KEGG: met:M446_4481 hypothetical protein.
 
  
 0.481
Mnod_5323
KEGG: met:M446_5019 putative signal peptide.
 
   
 0.423
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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