Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_1019PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: met:M446_1401 hypothetical protein. (177 aa)    
Predicted Functional Partners:
Mnod_1017
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: met:M446_1399 two component transcriptional regulator.
 
     0.594
Mnod_1018
PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: met:M446_1400 exonuclease RNase T and DNA polymerase III.
       0.592
Mnod_5169
TIGRFAM: conserved hypothetical membrane protein; KEGG: met:M446_4482 hypothetical protein.
  
     0.500
Mnod_1020
KEGG: met:M446_1402 hypothetical protein.
       0.492
Mnod_5168
PFAM: protein of unknown function DUF1355; KEGG: met:M446_4483 hypothetical protein.
  
     0.472
Mnod_5950
PFAM: N-formylglutamate amidohydrolase; KEGG: met:M446_5219 N-formylglutamate amidohydrolase.
  
     0.451
Mnod_1680
KEGG: met:M446_4849 hypothetical protein.
  
     0.441
Mnod_4470
PFAM: HemY domain protein; KEGG: met:M446_4536 HemY domain-containing protein.
  
     0.418
Mnod_4709
PFAM: GcrA cell cycle regulator; KEGG: met:M446_4194 GcrA cell cycle regulator.
  
     0.418
Mnod_2892
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
 
     0.415
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.