Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_1046PFAM: UspA domain protein; KEGG: met:M446_1664 UspA domain-containing protein. (279 aa)    
Predicted Functional Partners:
psuG
Indigoidine synthase A family protein; Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway; Belongs to the pseudouridine-5'-phosphate glycosidase family.
       0.537
Mnod_0307
KEGG: met:M446_2298 hypothetical protein.
  
     0.484
Mnod_0501
Transcriptional regulator, AraC family; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: helix-turn-helix- domain containing protein AraC type; Ada metal-binding domain protein; Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: met:M446_1042 AraC family transcriptional regulator.
  
  
 0.447
Mnod_0107
KEGG: met:M446_4743 TRAP-type uncharacterized transport system periplasmic component-like protein.
 
     0.437
Mnod_1668
PFAM: CsbD family protein; KEGG: met:M446_0717 CsbD family protein; Belongs to the UPF0337 (CsbD) family.
  
    0.431
Mnod_0519
KEGG: met:M446_2036 TRAP-type uncharacterized transport system periplasmic component-like protein.
 
     0.419
Mnod_4360
KEGG: mex:Mext_4583 polysaccharide biosynthesis protein.
  
     0.405
Mnod_1048
PFAM: histidine triad (HIT) protein; KEGG: met:M446_1667 histidine triad (HIT) protein.
 
    0.401
Mnod_5605
SMART: Parallel beta-helix repeat; KEGG: mpo:Mpop_4608 hemolysin-type calcium-binding region.
  
     0.400
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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