STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_1069KEGG: met:M446_2101 hypothetical protein. (166 aa)    
Predicted Functional Partners:
Mnod_1641
KEGG: met:M446_0456 hypothetical protein.
  
     0.761
Mnod_4552
Porin; KEGG: met:M446_3063 porin.
  
     0.743
pdxH
Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).
       0.737
Mnod_4668
KEGG: met:M446_4778 hypothetical protein.
  
     0.730
Mnod_0182
PFAM: transcription activator effector binding; KEGG: met:M446_3657 transcription activator effector binding.
  
     0.724
Mnod_1500
KEGG: met:M446_0679 hypothetical protein.
  
     0.723
Mnod_6053
KEGG: met:M446_5848 hypothetical protein.
  
     0.713
Mnod_6363
PFAM: AsmA family protein; KEGG: met:M446_5855 AsmA family protein.
  
     0.711
lptD
Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
     0.699
Mnod_0955
PFAM: NUDIX hydrolase; KEGG: met:M446_1441 NUDIX hydrolase.
  
     0.698
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.