Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Mnod_1072PFAM: protein of unknown function DUF1185; KEGG: met:M446_2104 hypothetical protein. (192 aa)    
Predicted Functional Partners:
Mnod_1248
KEGG: met:M446_1984 hypothetical protein.
 
     0.800
Mnod_1250
PFAM: ApbE family lipoprotein; KEGG: met:M446_1986 hypothetical protein.
 
     0.800
Mnod_1247
PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; ferredoxin; [2Fe-2S]-binding domain protein; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: met:M446_1983 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding.
 
     0.714
Mnod_1249
PFAM: regulatory protein MarR; KEGG: met:M446_1985 MarR family transcriptional regulator.
 
     0.655
Mnod_1242
PFAM: inner-membrane translocator; KEGG: met:M446_1977 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
     0.550
Mnod_1071
KEGG: met:M446_2103 FAD dependent oxidoreductase.
       0.523
Mnod_1241
PFAM: Extracellular ligand-binding receptor; KEGG: met:M446_1976 extracellular ligand-binding receptor.
 
     0.502
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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