Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_1077PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: gox:GOX0559 putative hydroxylase. (227 aa)    
Predicted Functional Partners:
Mnod_1078
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: gox:GOX0536 hydroxamate-type ferrisiderophore receptor.
 
  
 0.976
Mnod_1076
PFAM: PepSY-associated TM helix domain protein; KEGG: rpe:RPE_4573 PepSY-associated TM helix domain protein.
 
     0.856
Mnod_1075
KEGG: bpe:BP1212 hypothetical protein.
 
     0.839
Mnod_6957
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: nha:Nham_0972 TonB-dependent siderophore receptor.
 
  
 0.767
Mnod_2053
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: mex:Mext_2005 TonB-dependent siderophore receptor.
 
  
 0.749
Mnod_1407
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: met:M446_0831 TonB-dependent receptor plug.
 
  
 0.710
Mnod_3135
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: mpo:Mpop_1141 TonB-dependent siderophore receptor.
 
  
 0.706
Mnod_1074
KEGG: reh:H16_B2502 ABC-type transporter, periplasmic component.
 
     0.655
Mnod_1079
PFAM: Sel1 domain protein repeat-containing protein; KEGG: bmj:BMULJ_04724 SEL1 subfamily protein.
 
    0.591
Mnod_0006
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: spe:Spro_1016 TonB-dependent siderophore receptor.
 
  
 0.474
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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