Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_1079PFAM: Sel1 domain protein repeat-containing protein; KEGG: bmj:BMULJ_04724 SEL1 subfamily protein. (328 aa)    
Predicted Functional Partners:
Mnod_5537
TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; KEGG: met:M446_5154 flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
   
 
 0.725
Mnod_1077
PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: gox:GOX0559 putative hydroxylase.
 
    0.591
Mnod_0636
KEGG: cyt:cce_5237 hypothetical protein.
    
 0.575
Mnod_1078
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: gox:GOX0536 hydroxamate-type ferrisiderophore receptor.
 
     0.549
Mnod_7561
KEGG: met:M446_6826 AAA family ATPase, CDC48 subfamily protein; TIGRFAM: AAA family ATPase, CDC48 subfamily; PFAM: AAA ATPase VAT domain protein; AAA ATPase central domain protein; cell division protein 48 CDC48 domain 2; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; Belongs to the AAA ATPase family.
   
 0.520
Mnod_1076
PFAM: PepSY-associated TM helix domain protein; KEGG: rpe:RPE_4573 PepSY-associated TM helix domain protein.
       0.444
Mnod_1075
KEGG: bpe:BP1212 hypothetical protein.
       0.437
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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