Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Mnod_1104PFAM: Allophanate hydrolase subunit 1; KEGG: met:M446_2132 allophanate hydrolase subunit 1. (244 aa)    
Predicted Functional Partners:
Mnod_1105
TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; KEGG: met:M446_2133 UreA amidolyase related protein.
 0.999
Mnod_0900
TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; KEGG: rso:RS05395 hypothetical protein.
 
 0.990
pxpA-2
LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
 
  
 0.983
pxpA-3
LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
 
  
 0.923
pxpA
LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
 
  
 0.922
Mnod_1097
PFAM: protein of unknown function DUF1445; KEGG: met:M446_2125 hypothetical protein; Belongs to the D-glutamate cyclase family.
 
    0.893
Mnod_0227
PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: met:M446_3170 IclR family transcriptional regulator.
  
    0.607
Mnod_1632
PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: ajs:Ajs_0448 IclR family transcriptional regulator.
  
    0.607
Mnod_2088
PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: met:M446_4650 IclR family transcriptional regulator.
  
    0.607
Mnod_2718
PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: pol:Bpro_3341 transcriptional regulator, IclR family.
  
    0.607
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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