Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Mnod_1118PFAM: branched-chain amino acid transport; KEGG: met:M446_2156 branched-chain amino acid transport. (106 aa)    
Predicted Functional Partners:
Mnod_1117
PFAM: AzlC family protein; KEGG: met:M446_2155 AzlC family protein.
 
   
 0.880
Mnod_1116
PFAM: NLP/P60 protein; KEGG: met:M446_2154 NLP/P60 protein.
       0.653
Mnod_6675
PFAM: protein of unknown function UPF0150; KEGG: mrd:Mrad2831_5716 hypothetical protein.
  
     0.422
Mnod_5867
KEGG: met:M446_5371 putative acyl-CoA N-acyltransferase related protein.
  
     0.404
Mnod_6471
KEGG: met:M446_4267 hypothetical protein.
  
     0.401
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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